Index
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
K
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
W
|
Z
_
__call__() (abcsmc.ConstantEpsilon method)
(abcsmc.DistanceFunction method)
(abcsmc.Epsilon method)
(abcsmc.ListEpsilon method)
(abcsmc.MedianEpsilon method)
(abcsmc.PCADistanceFunction method)
(abcsmc.RangeEstimatorDistanceFunction method)
(abcsmc.ZScoreDistanceFunction method)
(connectome.function.modeltest.Criterion method)
(connectome.function.modeltest.Task method)
_shuffle_subpopulation() (connectome.noise.edgeshufflingnoise.EdgeShufflingNoise method)
A
ABCLoader (class in abcsmc)
abcsmc
module
ABCSMC (class in abcsmc)
add() (connectome.function.modeltest.TestSuiteResult method)
add_criterion() (connectome.function.modeltest.TestSuite method)
add_random_variables() (abcsmc.Kernel method)
adjacency_matrix() (connectome.model.network.Network property)
API (class in connectome.model.api)
append() (connectome.function.modeltest.TestSuiteResultList method)
append_population() (abcsmc.History method)
average_mass_at_tround_truth() (abcsmc.ABCLoader method)
B
BarrelCutNoise (class in connectome.noise.barrelcutnoise)
binarize() (connectome.model.network.Network method)
BlockStructure (class in connectome.model.block)
C
cdf() (abcsmc.LowerBoundDecorator method)
(abcsmc.RV method)
(abcsmc.RVBase method)
(abcsmc.RVDecorator method)
component (abcsmc.RVDecorator attribute)
confusion_matrices_table() (abcsmc.ABCLoader property)
confusion_matrix_dict() (abcsmc.ABCLoader method)
ConnectivityEstimator (class in connectome.analysis.connectivity)
connectome.function
module
connectome.function.criterion
module
connectome.noise
module
ConstantEpsilon (class in abcsmc)
construct_graph() (connectome.noise.combined_noise.RemoveAddNoiseAndSubsample method)
copy() (abcsmc.Distribution method)
(abcsmc.LowerBoundDecorator method)
(abcsmc.Parameter method)
(abcsmc.RV method)
(abcsmc.RVBase method)
(abcsmc.RVDecorator method)
(connectome.model.network.Network method)
Criterion (class in connectome.function.modeltest)
D
decorator_repr() (abcsmc.LowerBoundDecorator method)
(abcsmc.RVDecorator method)
DefaultContext (class in parallel)
DistanceFunction (class in abcsmc)
DistanceFunctionWithMeasureList (class in abcsmc)
distribution (abcsmc.RV attribute)
Distribution (class in abcsmc)
do_not_stop_when_only_single_model_alive() (abcsmc.ABCSMC method)
done() (abcsmc.History method)
(connectome.function.modeltest.TestSuiteResultList method)
E
edge_removal_probability() (connectome.noise.barrelcutnoise.BarrelCutNoise method)
EdgeShufflingNoise (class in connectome.noise.edgeshufflingnoise)
EmptyMultivariateMultiTypeNormalDistribution (class in abcsmc)
enqueue_model() (connectome.function.modeltest.TestSuite method)
Epsilon (class in abcsmc)
ER (class in connectome.model.er)
ERFEVER (class in connectome.model.fever)
execute_enqueued_models() (connectome.function.modeltest.TestSuite method)
EXP (class in connectome.model.exp)
F
FEVERInitialConnectivity (connectome.model.fever.ERFEVER attribute)
from_dictionary() (abcsmc.RV static method)
from_dictionary_of_dictionaries() (abcsmc.Distribution static method)
G
get_block() (connectome.model.network.Network method)
get_complete_population_median() (abcsmc.History method)
get_config() (abcsmc.ConstantEpsilon method)
(abcsmc.DistanceFunction method)
(abcsmc.DistanceFunctionWithMeasureList method)
(abcsmc.Epsilon method)
(abcsmc.ListEpsilon method)
(abcsmc.MedianEpsilon method)
(abcsmc.PercentileDistanceFunction method)
(abcsmc.RangeEstimatorDistanceFunction method)
get_cov() (abcsmc.History static method)
get_data() (connectome.function.task.texture.TextureTask method)
get_distribution() (abcsmc.History method)
get_model_probabilities() (abcsmc.History method)
get_parameter_names() (abcsmc.Distribution method)
get_parameter_std() (abcsmc.History method)
get_results() (abcsmc.History method)
get_results_distribution() (abcsmc.History method)
get_statistics() (abcsmc.History method)
GreaterThan (class in connectome.function.criterion)
group_parameters() (abcsmc.ABCLoader property)
H
History (class in abcsmc)
I
InAndOutDegreePreservingNoise (class in connectome.noise.inandoutdegreepreservingnoise)
initialize() (abcsmc.DistanceFunction method)
(abcsmc.DistanceFunctionWithMeasureList method)
(abcsmc.Epsilon method)
(abcsmc.MedianEpsilon method)
(abcsmc.PCADistanceFunction method)
(abcsmc.RangeEstimatorDistanceFunction method)
InOutDegreeCorrelation (class in connectome.analysis.inoutdegreecorrelation)
K
Kernel (class in abcsmc)
L
LessThan (class in connectome.function.criterion)
ListEpsilon (class in abcsmc)
LL (class in connectome.model.ll)
lower() (abcsmc.MinMaxDistanceFunction static method)
(abcsmc.PercentileDistanceFunction static method)
(abcsmc.RangeEstimatorDistanceFunction static method)
LowerBoundDecorator (class in abcsmc)
M
map() (parallel.SGE method)
(parallel.Slurm method)
mapper (connectome.function.modeltest.TestSuite attribute)
max_nr_populations() (abcsmc.ABCLoader property)
maximum_a_posteriori() (abcsmc.ABCLoader method)
maxs() (abcsmc.ABCLoader property)
means() (abcsmc.ABCLoader method)
measures_to_use (abcsmc.DistanceFunctionWithMeasureList attribute)
MedianEpsilon (class in abcsmc)
MemoryTask (class in connectome.function.task.memory)
MinMaxDistanceFunction (class in abcsmc)
model_names() (abcsmc.ABCLoader property)
ModelPerturbationKernel (class in abcsmc)
module
abcsmc
connectome.function
connectome.function.criterion
connectome.noise
parallel
MultivariateMultiTypeNormalDistribution() (in module abcsmc)
N
Network (class in connectome.model.network)
NetworkModelMixin (class in connectome.model.bases)
NonEmptyMultivariateMultiTypeNormalDistribution (class in abcsmc)
normalize() (connectome.model.network.Network method)
nr_exc() (connectome.model.bases.NetworkModelMixin property)
(connectome.model.block.BlockStructure property)
(connectome.model.network.Network property)
nr_inh() (connectome.model.bases.NetworkModelMixin property)
(connectome.model.block.BlockStructure property)
(connectome.model.network.Network property)
nr_neurons() (connectome.model.network.Network property)
nr_of_models_alive() (abcsmc.History method)
nr_simulations (abcsmc.History attribute)
O
OutDegreePreservingNoise (class in connectome.noise.outdegreepreservingnoise)
P
p_0() (connectome.model.exp.EXP static method)
parallel
module
Parameter (class in abcsmc)
particles_of_population() (abcsmc.ABCLoader method)
passed() (connectome.function.modeltest.TestSuiteResult property)
(connectome.function.modeltest.TestSuiteResultList property)
PCADistanceFunction (class in abcsmc)
pdf() (abcsmc.Distribution method)
(abcsmc.EmptyMultivariateMultiTypeNormalDistribution method)
(abcsmc.Kernel method)
(abcsmc.LowerBoundDecorator method)
(abcsmc.NonEmptyMultivariateMultiTypeNormalDistribution method)
(abcsmc.RV method)
(abcsmc.RVBase method)
(abcsmc.RVDecorator method)
PERCENTILE (abcsmc.PercentileDistanceFunction attribute)
PercentileDistanceFunction (class in abcsmc)
pes() (in module connectome.pes.strong_path_enumeration_sampling)
pmf() (abcsmc.LowerBoundDecorator method)
(abcsmc.ModelPerturbationKernel method)
(abcsmc.RV method)
(abcsmc.RVBase method)
(abcsmc.RVDecorator method)
ProfilingContext (class in parallel)
PropagationTask (class in connectome.function.task.propagation.task)
R
random_relabel_neurons() (connectome.model.network.Network method)
Range (class in connectome.function.criterion)
RangeEstimatorDistanceFunction (class in abcsmc)
ReciprocityEstimator (class in connectome.analysis.reciprocity)
RelativeCycleAnalysis (class in connectome.analysis.relativecycleanalysis)
RelativeReciprocityEstimator (class in connectome.analysis.relativereciprocity)
remove_neurons() (connectome.model.network.Network method)
RemoveAddNoiseAndSubsample (class in connectome.noise.combined_noise)
RemoveAndAddEdgesNoise (class in connectome.noise.removeandaddedgesnoise)
results() (abcsmc.ABCLoader method)
results_list() (connectome.function.modeltest.TestSuiteResultList property)
run() (abcsmc.ABCSMC method)
RV (class in abcsmc)
RVBase (class in abcsmc)
RVDecorator (class in abcsmc)
rvs() (abcsmc.Distribution method)
(abcsmc.EmptyMultivariateMultiTypeNormalDistribution method)
(abcsmc.Kernel method)
(abcsmc.LowerBoundDecorator method)
(abcsmc.ModelPerturbationKernel method)
(abcsmc.NonEmptyMultivariateMultiTypeNormalDistribution method)
(abcsmc.RV method)
(abcsmc.RVBase method)
(abcsmc.RVDecorator method)
S
sample_from_models() (abcsmc.History method)
sample_from_population() (abcsmc.History method)
sample_from_prior() (abcsmc.ABCSMC method)
sanitize_sample_from_prior() (abcsmc.DistanceFunctionWithMeasureList method)
set_data() (abcsmc.ABCSMC method)
SGE (class in parallel)
sge_available() (in module parallel)
shuffle_graph() (in module connectome.shuffling.uniform_degree_preserving_shuffling)
signed_to_positive_correlations() (connectome.model.api.API method)
Slurm (class in parallel)
slurm_available() (in module parallel)
SORN (class in connectome.model.sorn)
SQLDataStore (class in abcsmc)
start_end() (connectome.model.block.BlockStructure method)
store_initial_data() (abcsmc.History method)
Subsampling (class in connectome.noise.subsampling)
SYN (class in connectome.model.syn)
T
t() (abcsmc.History property)
Task (class in connectome.function.modeltest)
terminated_abc_smc_ids() (abcsmc.ABCLoader method)
test_model() (connectome.function.modeltest.TestSuite method)
TestResult (class in connectome.function.modeltest)
TestSuite (class in connectome.function.modeltest)
TestSuiteResult (class in connectome.function.modeltest)
TestSuiteResultList (class in connectome.function.modeltest)
TextureTask (class in connectome.function.task.texture)
to_json() (abcsmc.DistanceFunction method)
(abcsmc.Epsilon method)
total_nr_simulations() (abcsmc.History property)
TrueCriterion (class in connectome.function.criterion)
TuningTask (class in connectome.function.task.tuning)
U
UnsynchronizedActivityTask (class in connectome.function.task.unsynchronized)
update_random_variables() (abcsmc.Distribution method)
upper() (abcsmc.MinMaxDistanceFunction static method)
(abcsmc.PercentileDistanceFunction static method)
(abcsmc.RangeEstimatorDistanceFunction static method)
W
wait() (connectome.function.modeltest.TestSuiteResultList method)
weak_edge_pes() (in module connectome.pes.weak_path_enumeration_sampling)
Z
ZScoreDistanceFunction (class in abcsmc)
discriminatEM
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